Molecular docking study of active phytocompounds from the methanolic leaf extract of vitex negundo against cyclooxygenase-2
DOI:
https://doi.org/10.3329/bjp.v9i2.17543Keywords:
Phytocompounds, Cyclooxygenase, COX-2, Docking studies,Abstract
The aim of the study is to identify the phytocompounds with anti-inflammatory properties from the methanolic leaf extract of Vitex negundo and also to find the inhibitors of cyclooxygenase-2 (COX-2) enzyme through molecular docking. GC-MS was performed for the methanolic leaf extract of V. negundo. Various phenolic phytocompounds were identified through GC-MS. This Study has illustrated the binding of four biologically active compounds from the methanolic extract of V. negundo against the inflammation associated target COX-2 enzymes. The binding energy is evaluated through docking studies of the ligand with the target protein 6COX_A. These Phytochemical compounds have a good docking score and glide energy. Based on the results, binding energy was compared with the known COX-2 inhibitory compounds namely aspirin and ibuprofen. It is understood that these phytochemical compounds can be considered as strong inhibitors for COX-2 and possess potential medicinal values with anti-inflammatory properties.
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Adinarayana KPS, Ashoka Reddy P, Ajay Babu P. Structural studies on docking COX-2 inhibitors. J Bioinformatics Res. 2012; 1: 21-26.
Aswar PB, Khadabadi SS, Kuchekar BS, Rajurkar RM , Saboo1 SS and Javarkar RD. In vitro evaluation of antibacterial and anti-fungal activity of Vitexnigundo (Verbenaceae). Ethno Leaf. 2009; 13: 962-67.
Bryson K, McGuffin LJ, Marsden RL, Ward JJ, Sodhi JS, Jones DT. Protein structure prediction servers at University College London. Nucleic Acids Res. 2005; 33: 36-38.
Castro JA, Sasame HA, Sussman H, Gillette JR. Diverse effects of SKF 525-A and antioxidants on carbon tetrachloride-induced changes in liver microsomal P-450 content and ethylmorphine metabolism. Life Sci. 1968; 7: 129-36.
Dharmasiri MG, Jayakody JRAC, Galhena G, Liyanage SSP, Ratnasooriya WD. Anti-inflammatory and analgesic activities of mature fresh leaves of Vitex negundo. J Ethnopharmacol. 2003; 87: 199-206.
Dundas J, Ouyang Z, Tseng J, Binkowski A, Turpaz Y , Liang. CASTp: Computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res J. 2006; 34: 116-18.
Ghosh A. Herbal folk remedies of Bankura and Medinipur districts, West Bengal (India). Indian J Tradit Knowl. 2003; 2: 393-96.
Gierse JK, McDonald JJ, Hauser SD, Rangwala SH, Koboldt CM, Seibert K. A single amino acid difference between cyclooxygenase-1 (Cox-1) and -2 (Cox-2) reverses the selectivity of Cox-2 specific inhibitors. J Biol Chem. 1996; 271: 15810-14.
Gogoi D, Bezbaruah RL, Bordoloi M, Sarmah R, Bora TC. Insights from the docking analysis of biologically active compounds from plant Litsea Genus as potential COX-2 inhibitors. Bioinformation 2012; 8: 812-15.
Jones DT. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol. 1999; 292: 195-202.
Khokra S, Prakash O, Jain S, Aneja K, Dhingra Y. Essential oil composition and antibacterial studies of Vitex negundo Linn. extracts. Indian J Pharm Sci. 2008; 70: 522-26.
Kini RM, Evans HJ. Structure-function relationships of phospholipases. The anticoagulant region of phospholipases A2. J Biol Chem. 1987; 262: 14402-07.
Kulkarni PR, Virkar AD, DMello P. Antioxidant and anti-inflammatory activity of Vitex negundo. Indian J Pharm Sci. 2008; 70: 838-40.
Kurumbail RG, Stevens AM, Gierse JK, McDonald JJ, Stegeman RA, Pak JY, Gildehaus D, Miyashiro JM, Penning TD, Seibert K, Isakson PC, Stallings WC. Structural basis for selective inhibition of cyclooxygenase-2 by anti-inflammatory agents. Nature 1996; 384: 644-48.
Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PROCHECK: A program to check the stereochemical quality of protein structures. J Appl Cryst. 1993; 26: 283-91.
Laskowski RA, Swindells MB. LigPlot+: Multiple ligand-protein interaction diagrams for drug discovery. J Chem Inf Model. 2011; 51; 2778-86.
Mahmud S, Shareef H, Farrukh U, Kamil A, Rizwani GH. Antifungal activities of Vitex negundo linn. Pakistan J Bot. 2009; 41: 1941-43.
Mohanapriya A, Achuthan D. Comparative QSAR analysis of cyclooxygenase-2 inhibiting drugs. Bioinformation 2012; 8: 353-58.
Nathan C. Points of control in inflammation. Nature 2002; 420: 846-52.
Raji R. Biological activities, chemical constituents and medicinal value of Vitex negundo Linn. Universal J Pharm. 2013; 2: 42-46.
Saqib A, Karigar CS. Cyclooxygenase isoforms in health and disease. Internet J Pharmacol. 2009; 7: 1.
Sherman W, Day T, Jacobson MP, Friesner RA, Farid R. Novel procedure for modeling ligand/receptor induced fit effects. J Med Chem. 2006; 49: 534.
Sudha KN, Shakira M, Prasanthi P, Sarika N, Kumar N, Babu PA. Virtual screening for novel COX-2 inhibitors using the ZINC database. Bioinformation 2008; 2: 325.
Tandon VR. Medicinal uses and biological activities of Vitex negundo. Nat Prod Radiance. 2005; 4: 162-65.
Telang RS, Chatterjee S, Varshneya C. Studies on analgesic and anti-inflammatory activities of Vitex negundo Linn. Indian J Pharmacol. 1999; 31: 363-66.
Tiwari OP, Tripathi YB. Antioxidant properties of different fractions of Vitex negundo Linn. Food Chem. 2007; 100: 1170-76.
Vishwanathan AS, Basavaraju R. A review on Vitex negundo L.: A medicinally important plant. Eur J Biol Sci. 2010; 3: 30-42.
Wallner B, Elofsson A. Can correct protein models be identified? Protein Sci. 2003; 12: 1073-86.
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