Analysis of Differentially Expressed Unigenes Involved in the Development of Korean Pine (Pinus Koraiensis Sieb. ET Zucc.)

Authors

  • Dan Hou State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
  • Li Zhang Medical School, Shandong Xiandai University, Jinan 250000, China.
  • Jinning Wang Bohai Forest Seed orchard in Ning'an City, Mudanjiang 157400, China.
  • Jinquan Li Bohai Forest Seed orchard in Ning'an City, Mudanjiang 157400, China
  • Lei Zhang State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
  • Hanguo Zhang State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China

DOI:

https://doi.org/10.3329/bjb.v52i2.66945

Keywords:

Korean pine, Transcriptome, GO enrichment, KEGG enrichment, Differentially expressed unigenes

Abstract

Korean pine is a monoecism gymnosperm that predominantly exists as both female and male. Due to the absence of a model organism reference genome, high-throughput sequencing was used to analyze the candidate unigenes of tissue and organ development. This was performed in the tissues of microstrobilli (Ms), needles (Ne), and mixed buds (Mb) of the Korean pine to mine for genes related to bud differentiation and flowering. Overall, 26.32 Gb of clean data comprising 26972 annotated unigenes were obtained. Out of these, 26323 (97.59%) were annotated in the NR database based on sequence homology. Twenty-four GO terms and 30 candidate unigenes related to the formation or development of flowers, needles, buds, and pollens were found by GO enrichment analysis.

Bangladesh J. Bot. 52(2): 243-252, 2023 (June)

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Published

2023-06-25

How to Cite

Hou, D. ., Zhang, L. ., Wang, J. ., Li, J. ., Zhang, L. ., & Zhang, H. . (2023). Analysis of Differentially Expressed Unigenes Involved in the Development of Korean Pine (Pinus Koraiensis Sieb. ET Zucc.). Bangladesh Journal of Botany, 52(2), 243–252. https://doi.org/10.3329/bjb.v52i2.66945

Issue

Vol. 52 No. 2 (2023)

Section

Articles

License

© Bangladesh Botanical Society

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